PyProBound
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Examples

  • CTCF: Single Experiment
  • CTCF: Multiple Experiments
  • UbxExdHth: Binding Cooperativity
  • CEBPγ: EpiSELEX-seq
  • Dll: Kd-seq
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  • Src: Kinase-seq with Early Stopping
  • CEBPγ: PBM
  • CTCF: ChIP-seq

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        • logo()
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PyProBound
  • pyprobound
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  • pyprobound.plotting.logo
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pyprobound.plotting.logo

logo(psam, logo_height=2, width=8, reverse=False, fix_gauge=True)

Plots a sequence recognition logo for the given PSAM.

Parameters:
  • psam (PSAM) – A PSAM to plot into a logo.

  • reverse (bool) – Whether to plot the reverse complement.

  • fix_gauge (bool) – Whether to call fix_gauge() before plotting the logo.

Return type:

None

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