pyprobound.plotting.kmer_enrichment

kmer_enrichment(experiment, batch, columns=None, kmer_length=3, kernel=500, max_split=None)

Plots the enrichment of k-mers, binned by predicted enrichment.

Parameters:

• experiment (Experiment) – An experiment modeling a selection.

• batch (CountBatch) – A batch corresponding to the provided experiment.

• columns (Sequence[int] | None) – The column indices to keep for plotting.

• kernel (int) – The bin for average pooling of enrichment-sorted k-mers.

• max_split (int | None) – Maximum number of sequences scored at a time.

Return type:

None