PyProBound
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User Guide
Advanced Configuration
Examples
CTCF: Single Experiment
CTCF: Multiple Experiments
UbxExdHth: Binding Cooperativity
CEBPγ: EpiSELEX-seq
Dll: Kd-seq
GR: ChIP-seq
Src: Kinase-seq
Src: Kinase-seq with Early Stopping
CEBPγ: PBM
CTCF: ChIP-seq
API
API Overview
pyprobound
pyprobound.aggregate
pyprobound.alphabets
pyprobound.base
pyprobound.containers
pyprobound.cooperativity
pyprobound.experiment
pyprobound.external
pyprobound.external.get_fit_final
pyprobound.external.import_hocomoco
pyprobound.external.import_jaspar
import_jaspar()
pyprobound.external.import_motif_central
pyprobound.external.parse_probound_aggregate
pyprobound.external.parse_probound_alphabet
pyprobound.external.parse_probound_interactions
pyprobound.external.parse_probound_model
pyprobound.external.parse_probound_modes
pyprobound.external.parse_probound_psam
pyprobound.external.parse_probound_rounds
pyprobound.external.parse_probound_tables
pyprobound.fitting
pyprobound.layers
pyprobound.loss
pyprobound.mode
pyprobound.optimizer
pyprobound.plotting
pyprobound.rounds
pyprobound.table
pyprobound.utils
PyProBound
pyprobound
pyprobound.external
pyprobound.external.import_jaspar
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pyprobound.external.import_jaspar
import_jaspar
(
fit_id
)
Parses a PSAM from an ID in JASPAR.
Return type
:
PSAM